Skip to contents

All functions

gatherInitialClusters()
Gather initial cluster names
calculateDistMatOneModel()
Calculate distance matrix with in one model
cosineSimilarityR()
cosine similarity in R
downsampling()
Downsampling cells
estimateProb()
Estimate the empirical probability of whether two set of cells from distinct batches belong to the same population
finalClustering()
Final clustering step for meta-clustering
getDistMat()
Calculate the Similarity Matrix
getGroupFit()
Calculate IDER-based similarity between two groups
getIDEr()
Compute IDER-based similarity
hdbscan.seurat()
Initial clustering for evaluating integration
initialClustering()
Initial clustering
measureSimilarity()
Measure similarity between two vectors
mergeInitialClusters()
Merge Initial Clusters
pancreas
Pancreatic scRNA-Seq data.
plotDistMat()
Plot Similarity Matrix with pheatmap
plotHeatmap()
Plot Heatmap for the IDER-based similarity matrix
plotNetwork()
Plot Network Graph
scatterPlot()
Scatterplot by a selected feature