Function reference
-
gatherInitialClusters() - Gather initial cluster names
-
calculateDistMatOneModel() - Calculate distance matrix with in one model
-
cosineSimilarityR() - cosine similarity in R
-
downsampling() - Downsampling cells
-
estimateProb() - Estimate the empirical probability of whether two set of cells from distinct batches belong to the same population
-
finalClustering() - Final clustering step for meta-clustering
-
getDistMat() - Calculate the Similarity Matrix
-
getGroupFit() - Calculate IDER-based similarity between two groups
-
getIDEr() - Compute IDER-based similarity
-
hdbscan.seurat() - Initial clustering for evaluating integration
-
initialClustering() - Initial clustering
-
measureSimilarity() - Measure similarity between two vectors
-
mergeInitialClusters() - Merge Initial Clusters
-
pancreas - Pancreatic scRNA-Seq data.
-
plotDistMat() - Plot Similarity Matrix with pheatmap
-
plotHeatmap() - Plot Heatmap for the IDER-based similarity matrix
-
plotNetwork() - Plot Network Graph
-
scatterPlot() - Scatterplot by a selected feature