Estimate the empirical probability of whether two set of cells from distinct batches belong to the same population — estimateProb • CIDER

Estimate the empirical probability of whether two set of cells from distinct batches belong to the same population

Usage

estimateProb(seu, ider, n_size = 40, n.perm = 5, verbose = FALSE)

Arguments

seu: A Seurat object
ider: The output list of function `getIDEr`.
n_size: Number of cells per group used to compute the similarity. Default: 40
n.perm: Numeric. Time of permutations.
verbose: Boolean. Print out progress or not. (Default: FALSEW)

Value

A Seurat object with IDER-based similarity and empirical probability of rejection

See also

Usage of this function should be after hdbscan.seurat and getIDEr